miRBase entry: sma-mir-190

Stem-loop sma-mir-190


Accession
MI0021819
Description
Schistosoma mansoni sma-mir-190 precursor miRNA
Gene family
MIPF0001853; mir-190_2

Literature search
1 open access papers mention sma-mir-190
(3 sentences)

Sequence

cgauaguagacuagucgaugUGAUAUGUAUGGGUUACUUGGUGucagcggauaacauauuguguucgcuauuaaaacacacCAGUGACCAGACAUAUCCCUaucgcauaguuuagaucauc
.(((..(((((((..(((((.(((((((...(((((((.(((((.((((((((........))))))))........))))))))))))..)))))))..)))))..))))))).)))...

Structure
--c   ag       gu     -U       AUG       U     -------c        aca 
   gau  uagacua  cgaug  GAUAUGU   GGUUACU GGUGu        agcggaua   u
   |||  |||||||  |||||  |||||||   ||||||| |||||        ||||||||    
   cua  auuugau  gcuaU  CUAUACA   CCAGUGA Ccaca        ucgcuugu   a
cua   -g       ac     CC       -GA       -     caaaauua        guu 


Annotation confidence Not enough data
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Genome context
Chr_1: 34471102-34471222 [+]

Database links

Mature sma-miR-190-5p

Accession MIMAT0025027
Description Schistosoma mansoni sma-miR-190-5p mature miRNA
Sequence 21 - UGAUAUGUAUGGGUUACUUGGUG - 43
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-190-3p

Accession MIMAT0025028
Description Schistosoma mansoni sma-miR-190-3p mature miRNA
Sequence 82 - CAGUGACCAGACAUAUCCCU - 101
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402