Stem-loop sequence sma-mir-2b

Accession

MI0021821 (change log)

Description

Schistosoma mansoni miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

4 open access papers mention sma-mir-2b
(11 sentences)

Stem-loop

   --      u  - c      ---    a      a   ucgu 
5'   aggugg gc g gucuca   aggg cuguga aca    a
     |||||| || | ||||||   |||| |||||| |||    a
3'   uccauc cg c cagggu   uccc gacacu ugu    c
   cg      -  a a      ucg    -      a   uuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WTSI5): Chr_W: 22875844-22875922 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sma-mir-2b

• sma-mir-71a: Chr_W: 22875654-22875735 [+]
• sma-mir-2a: Chr_W: 22875749-22875826 [+]
• sma-mir-2b: Chr_W: 22875844-22875922 [+]
• sma-mir-2e: Chr_W: 22875945-22876027 [+]

Database links

• miRBase Tracker:MI0021821

Mature sequence sma-miR-2b-5p

• Accession: MIMAT0025031
• Sequence: 11 - cgucucaagggacugugaaaca - 32
• Evidence: experimental; Illumina [2], SOLiD [2]

Mature sequence sma-miR-2b-3p

• Accession: MIMAT0025032
• Sequence: 46 - uaucacagcccugcuugggacaca - 69
• Evidence: experimental; Illumina [2], SOLiD [2]

References

1. PMID:21640815 "Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni" de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C Genomics. 98:96-111(2011).
2. PMID:24069470 "Sex-biased expression of microRNAs in Schistosoma mansoni" Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M PLoS Negl Trop Dis. 7:e2402(2013).