Stem-loop sma-mir-31

Accession

MI0021825

Description

Schistosoma mansoni sma-mir-31 precursor miRNA

Gene family

MIPF0001803; mir-31_2

Literature search

2 open access papers mention sma-mir-31
(2 sentences)

Sequence

uguuuauuguUGGCAAGAUUAUGGCGAAGCUGAauaaaccacaaaguguuucAGCUUCCCCUGAUACUGCCAACaaacauggc
......(((((((((..((((.((.(((((((((...((......))..))))))))))).))))..))))))))).......

Structure

-uguuua         AG    U  C         uaa  ca 
       uuguUGGCA  AUUA GG GAAGCUGAa   ac  c
       |||||||||  |||| || |||||||||   ||   
       aaCAACCGU  UAGU CC CUUCGAcuu   ug  a
cgguaca         CA    C  -         -ug  aa 

Annotation confidence Not enough data

Genome context

Chr_6: 1777481-1777563 [-]

Mature sma-miR-31-5p

• Accession: MIMAT0025038
• Description: Schistosoma mansoni sma-miR-31-5p mature miRNA
• Sequence: 11 - UGGCAAGAUUAUGGCGAAGCUGA - 33
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-31-3p

• Accession: MIMAT0032136
• Description: Schistosoma mansoni sma-miR-31-3p mature miRNA
• Sequence: 53 - AGCUUCCCCUGAUACUGCCAAC - 74
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402