Stem-loop sequence sma-mir-71b

Accession

MI0021830 (change log)

Description

Schistosoma mansoni miR-71b stem-loop

Gene family

MIPF0000278; mir-71

Literature search

7 open access papers mention sma-mir-71b
(25 sentences)

Stem-loop

   -  -  uu   au         g    g    a    uac  cgu  uu 
5'  cc gu  gcc  gaaagacuu agua ugag cgcu   ag   gg  u
    || ||  |||  ||||||||| |||| |||| ||||   ||   ||   
3'  gg ca  cgg  cuuucugag ucau acuc gcgg   uc   cc  u
   c  u  cu   cc         -    -    c    -cu  ---  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WTSI5): Chr_5: 1982759-1982850 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sma-mir-71b

• sma-mir-71b: Chr_5: 1982759-1982850 [-]
• sma-mir-2f: Chr_5: 1982640-1982726 [-]
• sma-mir-2d: Chr_5: 1982526-1982613 [-]
• sma-mir-2c: Chr_5: 1982423-1982497 [-]

Database links

• miRBase Tracker:MI0021830

Mature sequence sma-miR-71b-5p

• Accession: MIMAT0025043
• Sequence: 11 - ugaaagacuugaguagugagacg - 33
• Evidence: experimental; Illumina [2], SOLiD [2]

Mature sequence sma-miR-71b-3p

• Accession: MIMAT0025044
• Sequence: 62 - ccucauacugagucuuucccg - 82
• Evidence: experimental; Illumina [2], SOLiD [2]

References

1. PMID:21640815 "Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni" de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C Genomics. 98:96-111(2011).
2. PMID:24069470 "Sex-biased expression of microRNAs in Schistosoma mansoni" Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M PLoS Negl Trop Dis. 7:e2402(2013).