miRBase entry: rno-mir-3075

Stem-loop rno-mir-3075


Accession
MI0021842
Description
Rattus norvegicus rno-mir-3075 precursor miRNA
Gene family
MIPF0001489; mir-3075


Sequence

414 reads, 3 reads per million, 210 experiments
cugcuauuuacucugcgguuuguacUGUCUGGGAGCAGCCAAGGACAAGuuaccucuugucuucuguccuuggccuuccuagguguccaagcucacgcaggcugggagccaga
(((((.((((.(((((((((((.((..((((((((..((((((((((....((.....))....)))))))))).)))))))).)).)))))...)))))).)))))).))).

Structure
-   -  a    c      ---     u  UG        CA          AGuu  c 
 cug cu uuua ucugcg   guuug ac  UCUGGGAG  GCCAAGGACA    ac u
 ||| || |||| ||||||   ||||| ||  ||||||||  ||||||||||    || c
 gac ga gggu ggacgc   cgaac ug  ggauccuu  cgguuccugu    ug u
a   c  -    c      acu     c  -u        -c          cuuc  u 


Annotation confidence Not enough data
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Genome context
chr16: 1822805-1822917 [+]

Database links

Mature rno-miR-3075

Accession MIMAT0025057
Description Rattus norvegicus rno-miR-3075 mature miRNA
Sequence 26 - UGUCUGGGAGCAGCCAAGGACAAG - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324