miRBase entry: rno-mir-6325

Stem-loop rno-mir-6325


Accession
MI0021849
Description
Rattus norvegicus rno-mir-6325 precursor miRNA

Literature search
2 open access papers mention rno-mir-6325
(4 sentences)

Sequence

119 reads, 8 reads per million, 57 experiments
guaauuguguuuccucuugaacuugcugcugaccuccgcugcugccaagagucuccgucuggccuuucaacugaacugAAAGUCAGACAGAGACUCUGCAGggaguuccaggccuucauugcuagauggggacugcugaga
......(((((((((((((((...(((...((.((((.((((.....((((((((.(((((((.(((((.......)))))))))))).)))))))))))))))).))..))).)))).....))).)))))).)).....

Structure
guaauu  -      -   -----    cuu   gcu  c    g    ugcca        c       c     ac 
      gu guuucc ucu     ugaa   gcu   ga cucc cugc     agagucuc gucuggc uuuca  u
      || |||||| |||     ||||   |||   || |||| ||||     |||||||| ||||||| |||||  g
      cg cagggg aga     acuu   cgg   cu gagg GACG     UCUCAGAG CAGACUG AAAgu  a
-agagu  u      u   ucguu    --c   -ac  u    -    -----        A       -     ca 


Annotation confidence High
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Genome context
chr11: 36729251-36729391 [+]

Database links

Mature rno-miR-6325

Accession MIMAT0025064
Description Rattus norvegicus rno-miR-6325 mature miRNA
Sequence 79 - AAAGUCAGACAGAGACUCUGCAG - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324