miRBase entry: rno-mir-6333

Stem-loop rno-mir-6333


Accession
MI0021859
Description
Rattus norvegicus rno-mir-6333 precursor miRNA


Sequence

26 reads, 7 reads per million, 26 experiments
ggaaggaguccaggcugcuuugguccccagguuauggcugcucaccuccaccugccagacaggUAGGCUGGACUUGAACAGCCCGCcuggugucccccgcaggcugcguua
..........(((.((((...((.(.((((((...(((((.(((..((((((((((.....)))))).))))..))).))))).)))))).).))...)))).))).....

Structure
ggaaggaguc   g    uuu  u c      uau     c   cc    -      a 
          cag cugc   gg c ccaggu   ggcug uca  ucca ccugcc g
          ||| ||||   || | ||||||   ||||| |||  |||| |||||| a
          guc gacg   cc g ggucCG   CCGAC AGU  AGGU GGAUgg c
-----auugc   g    ccc  u u      --C     A   UC    C      a 


Annotation confidence Not enough data
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Genome context
chr5: 153843901-153844011 [+]

Database links

Mature rno-miR-6333

Accession MIMAT0025074
Description Rattus norvegicus rno-miR-6333 mature miRNA
Sequence 64 - UAGGCUGGACUUGAACAGCCCGC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324