miRBase entry: ptc-MIR6421

Stem-loop ptc-MIR6421


Accession
MI0021962
Description
Populus trichocarpa ptc-MIR6421 precursor miRNA


Sequence

ugaaauccaaguggacuUCCCUUACAAUCUACUCUUUCaguuucacagaagauccagauuagauuuuaaggcaaacaaauugaUAGAGCAGAUUGUAAGGGAAGcccacauggauuuca
(((((((((.((((.(((((((((((((((.((((.(((((((..(..((((((.......))))))..)......))))))).)))).))))))))))))))).)))).)))))))))

Structure
         a    a               A    U       ----ca ag      ca 
ugaaaucca gugg cuUCCCUUACAAUCU CUCU UCaguuu      c  aagauc  g
||||||||| |||| ||||||||||||||| |||| |||||||      |  ||||||  a
acuuuaggu cacc GAAGGGAAUGUUAGA GAGA aguuaaa      g  uuuuag  u
         a    c               C    U       caaacg aa      au 


Annotation confidence Not enough data
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Genome context
CM000337.2: 5198860-5198978 [-]

Database links

Mature ptc-miR6421-5p

Accession MIMAT0025180
Description Populus trichocarpa ptc-miR6421-5p mature miRNA
Sequence 18 - UCCCUUACAAUCUACUCUUUC - 38
Evidence experimental
miRNAseq [1], Illumina [2]

Mature ptc-miR6421-3p

Accession MIMAT0025181
Description Populus trichocarpa ptc-miR6421-3p mature miRNA
Sequence 84 - UAGAGCAGAUUGUAAGGGAAG - 104
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233