miRBase entry: ptc-MIR6476a

Stem-loop ptc-MIR6476a


Accession
MI0021991
Description
Populus trichocarpa ptc-MIR6476a precursor miRNA
Gene family
MIPF0001687; MIR6476


Sequence

uggagaugcggaUCAGUGGAGAUGAAACAUGAuugcuacagcauugcuaaguguuuaaagaugaacugugugguuauuuccuuggugaauguauuuuua
((((((((((.(((((.((((((((.((((((((..((.((((((....))))))))..)))....)))))..)))))))))))))...))))))))))

Structure
          --g     U        -A     ----   gc  c      g 
uggagaugcg   aUCAG GGAGAUGA  ACAUG    Auu  ua agcauu c
||||||||||   ||||| ||||||||  |||||    |||  || ||||||  
auuuuuaugu   ugguu ccuuuauu  ugugu    uag  au uuguga u
          aag     -        gg     caag   aa  -      a 


Annotation confidence Not enough data
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Genome context
CM000344.2: 11415537-11415635 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR6476a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6476a

Accession MIMAT0025217
Description Populus trichocarpa ptc-miR6476a mature miRNA
Sequence 13 - UCAGUGGAGAUGAAACAUGA - 32
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034