miRBase entry: ptc-MIR6480

Stem-loop ptc-MIR6480


Accession
MI0021997
Description
Populus trichocarpa ptc-MIR6480 precursor miRNA


Sequence

cucgcaaccucugucucggaacaauaguucaaucuuuucagcaaccuuaaauagugggcuauuuaaggUUGCUGAAACGAUUGAACUAUugugacuugugag
(((((((.....(((.....((((((((((((((.(((((((((((((((((((....))))))))))))))))))).))))))))))))))))))))))))

Structure
       ccucu   ucgga              u                   u 
cucgcaa     guc     acaauaguucaauc uuucagcaaccuuaaauag g
|||||||     |||     |||||||||||||| |||||||||||||||||||  
gaguguu     cag     uguUAUCAAGUUAG AAAGUCGUUggaauuuauc g
       -----   -----              C                   g 


Annotation confidence Not enough data
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Genome context
CM000345.2: 10834993-10835094 [+]

Database links

Mature ptc-miR6480

Accession MIMAT0025223
Description Populus trichocarpa ptc-miR6480 mature miRNA
Sequence 69 - UUGCUGAAACGAUUGAACUAU - 89
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233