miRBase entry: ptc-MIR6429

Stem-loop ptc-MIR6429


Accession
MI0022003
Description
Populus trichocarpa ptc-MIR6429 precursor miRNA


Sequence

auaacuucauuauagauaguuaacucaucaccagucaaugcaucacugcuagcacaugcaagcuuucaguugacauuuccuguuauauaaagaauuccucagaagaaaagcUAGUAGAAAUGCAUUGACUAGugaugaguuaauuucaguugauuugcuguuau
.................((((((((((((((.(((((((((((..((((((((.........((((.(..(((((.....)))))..)))))..(((....))).....))))))))..))))))))))).)))))))))))))).((((......))))....

Structure
--auaacuucauuauagau              c           ca        --------acaugcaag    c gu     u 
                   aguuaacucaucac agucaaugcau  cugcuagc                 cuuu a  ugaca u
                   |||||||||||||| |||||||||||  ||||||||                 |||| |  ||||| u
                   uuaauugaguaguG UCAGUUACGUA  GAUGAUcg                 gaaa u  auugu c
uauugucguuuaguugacu              A           AA        aaaagaagacuccuuaa    - au     c 


Annotation confidence Not enough data
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Genome context
CM000337.2: 24230985-24231148 [-]

Database links

Mature ptc-miR6429

Accession MIMAT0025230
Description Populus trichocarpa ptc-miR6429 mature miRNA
Sequence 112 - UAGUAGAAAUGCAUUGACUAG - 132
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034