Stem-loop ptc-MIR6422

Accession

MI0022008

Description

Populus trichocarpa ptc-MIR6422 precursor miRNA

Sequence

guauaaugccaaccauagccuccauuaucacacuauuuuguuugguauuuuaccaaacaaaauggUGUGAUAAUGAAGGCUAUGGUuggcauuauugc
..(((((((((((((((((((.(((((((((((((((((((((((((...))))))))))))))))))))))))).)))))))))))))))))))...

Structure

-gu                   c                         u 
   auaaugccaaccauagccu cauuaucacacuauuuuguuuggua  
   ||||||||||||||||||| ||||||||||||||||||||||||| u
   uauuacgguUGGUAUCGGA GUAAUAGUGUgguaaaacaaaccau  
cgu                   A                         u 

Annotation confidence Not enough data

Genome context

CM000337.2: 5941971-5942068 [+]

Mature ptc-miR6422

• Accession: MIMAT0025236
• Description: Populus trichocarpa ptc-miR6422 mature miRNA
• Sequence: 66 - UGUGAUAAUGAAGGCUAUGGU - 86
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233