Stem-loop ptc-MIR6435

Accession

MI0022010

Description

Populus trichocarpa ptc-MIR6435 precursor miRNA

Sequence

uagaagUGAAUAAUGGAGACACUCUAGuugucaauguugucaacaaagcccgauauaacgucaccauucauugguaaauagauugucuuccauauuucagcuuuucua
.(((((((((..(((((((((.((((((((.((....)).)))).......(((.....)))((((.....))))...)))).)))).)))))..)))).)))))...

Structure

--u     -    UA     -    C    ----------------------------------    u  a 
   agaag UGAA  AUGGA GACA UCUA                                  Guug ca u
   ||||| ||||  ||||| |||| ||||                                  |||| ||  
   uuuuc acuu  uaccu cugu agau                                  caac gu g
auc     g    ua     u    u    aaaugguuacuuaccacugcaauauagcccgaaa    u  u 

Annotation confidence Not enough data

Genome context

CM000346.2: 17097396-17097503 [+]

Mature ptc-miR6435

• Accession: MIMAT0025238
• Description: Populus trichocarpa ptc-miR6435 mature miRNA
• Sequence: 7 - UGAAUAAUGGAGACACUCUAG - 27
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034