miRBase entry: ptc-MIR6437a

Stem-loop ptc-MIR6437a


Accession
MI0022012
Description
Populus trichocarpa ptc-MIR6437a precursor miRNA
Gene family
MIPF0001475; MIR6437


Sequence

uagaggugcuggugcugcuggaggcugguggcggugucuuggcUCACGGACGGCGGCUCCAAGCAgcggcagcggugcuac
(((.(.(((((.(((((((((((.(((.((.(.(((........))).).)).))))))).))))))).))))).).))).

Structure
-   a g     g       -    g   g  g g   ucu 
 uag g ugcug ugcugcu ggag cug ug c gug   u
 ||| | ||||| ||||||| |||| ||| || | |||    
 auc u gcgac gcgACGA CCUC GGC GC G CAC   g
c   g g     g       A    -   G  A G   Ucg 


Annotation confidence Not enough data
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Genome context
CM000337.2: 42466065-42466145 [-]

Database links

Mature ptc-miR6437a

Accession MIMAT0025240
Description Populus trichocarpa ptc-miR6437a mature miRNA
Sequence 44 - UCACGGACGGCGGCUCCAAGCA - 65
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034