miRBase entry: ptc-MIR6442

Stem-loop ptc-MIR6442


Accession
MI0022017
Description
Populus trichocarpa ptc-MIR6442 precursor miRNA


Sequence

guuugaacuucuugcaugucaagccguucaagccuagucugaaaggucaggagggcgugcuauucggucuaggcCUGAACGGCUUGAAGGGCACGuuguucaggc
((((((((..(.(((...((((((((((((.((((((.(((((.((.((.(....).)))).))))).)))))).))))))))))))...))).)..))))))))

Structure
        uu u   aug            a      u     a  u  g a 
guuugaac  c ugc   ucaagccguuca gccuag cugaa gg ca g g
||||||||  | |||   |||||||||||| |||||| ||||| || || |  
cggacuug  G ACG   AGUUCGGCAAGU cggauc ggcuu uc gu c g
        uu C   GGA            C      u     a  -  g g 


Annotation confidence Not enough data
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Genome context
CM000348.2: 758346-758450 [-]

Database links

Mature ptc-miR6442

Accession MIMAT0025245
Description Populus trichocarpa ptc-miR6442 mature miRNA
Sequence 75 - CUGAACGGCUUGAAGGGCACG - 95
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034