miRBase entry: ptc-MIR6443

Stem-loop ptc-MIR6443


Accession
MI0022018
Description
Populus trichocarpa ptc-MIR6443 precursor miRNA


Sequence

uacaaacuccucauuuaaaugauuuuguugcuguaaagacaaaugaacauuguuucuucuugcuuugagaaacuaguggggacaccggucacGUAUGAUCAUAGAUGAUGGAGggua
......(((((((((((......((((((........))))))....(((((((((((........))))))).))))((....))(((((....))))).))))))).))))....

Structure
uacaaa    -       aaugauuuuguugcuguaaagacaaaugaacauuguuucuucuugcuuugagaaacuaguggggacacc     c 
      cucc ucauuua                                                                     gguca G
      |||| |||||||                                                                     |||||  
      GAGG AGUAGAU                                                                     CUAGU U
--augg    U       --------------------------------------------------------------------A     A 


Annotation confidence Not enough data
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Genome context
CM000348.2: 5187433-5187549 [-]

Database links

Mature ptc-miR6443

Accession MIMAT0025246
Description Populus trichocarpa ptc-miR6443 mature miRNA
Sequence 93 - GUAUGAUCAUAGAUGAUGGAG - 113
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034