miRBase entry: ptc-MIR6444

Stem-loop ptc-MIR6444


Accession
MI0022019
Description
Populus trichocarpa ptc-MIR6444 precursor miRNA


Sequence

aaggugcaagggagaauaaauggaaucacaauagaguuaucuUAGGAAAAUUAGAGAUUAUGUuuuauuuuauauuauaucuuaauuagaaaucuacuuauuuuaggucuucauacaugaguuguagauaauuauaaucucuaauuuuccuaagauaauuauacugcaaaucuuccauuuauucuccaucagaugcuccuu
((((.(((..(((((((((((((((......(((((((((((((((((((((((((((((((..(((((......((((.((((..((((((((((.......))))).))).))..)))).))))))))).))))))))))))))))))))))))))))...)))......)))))))))))))))......))).))))

Structure
    u   ----ag               ucacaa   ---                            Uu     uuauau    u    au  -   -     cu 
aagg gca      ggagaauaaauggaa      uag   aguuaucuUAGGAAAAUUAGAGAUUAUG  uuauu      uaua cuua  ua gaa aucua  u
|||| |||      |||||||||||||||      |||   ||||||||||||||||||||||||||||  |||||      |||| ||||  || ||| |||||  a
uucc cgu      ccucuuauuuaccuu      guc   uuaauagaauccuuuuaaucucuaauau  aauag      augu gagu  au cuu uggau  u
    u   agacua               cuaaac   aua                            -u     ------    u    ac  a   c     uu 


Annotation confidence Not enough data
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Genome context
CM000348.2: 6317192-6317392 [+]

Database links

Mature ptc-miR6444

Accession MIMAT0025247
Description Populus trichocarpa ptc-miR6444 mature miRNA
Sequence 43 - UAGGAAAAUUAGAGAUUAUGU - 63
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034