Stem-loop ptc-MIR477c

Accession

MI0022029

Description

Populus trichocarpa ptc-MIR477c precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ptc-MIR477c
(1 sentences)

Sequence

augguuggagaagcucccaacucccucaaagguuuccagcaucacauaauugcuucaaguaaugggaauguuGGAAACCUUUUGUGGGGGUUUGagagcuuacuccccau
((((..(((((((((((.(((((((.((((((((((((((((..(...((((((...)))))).)..)))))))))))).)))).))))))).).)))))).))))))))

Structure

    uu    -      - c       u    -            ca aua      u 
augg  ggag aagcuc c aacuccc caaa gguuuccagcau  c   auugcu  
||||  |||| |||||| | ||||||| |||| ||||||||||||  |   |||||| c
uacc  ccuc uucgag G UUGGGGG GUUU CCAAAGGuugua  g   uaauga  
    --    a      a U       U    U            ag --g      a 

Annotation confidence Not enough data

Genome context

CM000351.2: 12329499-12329608 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR477c

Mature ptc-miR477c

• Accession: MIMAT0025257
• Description: Populus trichocarpa ptc-miR477c mature miRNA
• Sequence: 73 - GGAAACCUUUUGUGGGGGUUUG - 94
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233