miRBase entry: ptc-MIR536

Stem-loop ptc-MIR536


Accession
MI0022032
Description
Populus trichocarpa ptc-MIR536 precursor miRNA


Sequence

aggaagguuucagaCGCUCGCCAGCGUUGCACCACCaaaacuugcaaaaguucugauggugccacgcugugugcgucuaaaaucucuu
.(((.(((((.((((((.(((.(((((.((((((.((.(((((....))))).)).)))))).)))))))).)))))).)))))))).

Structure
a   a     c      U   C     U      C  a     g 
 gga gguuu agaCGC CGC AGCGU GCACCA Ca aacuu c
 ||| ||||| |||||| ||| ||||| |||||| || |||||  
 ucu cuaaa ucugcg gug ucgca cguggu gu uugaa a
u   -     a      u   -     c      a  c     a 


Annotation confidence Not enough data
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Genome context
CM000337.2: 10455706-10455793 [-]

Database links

Mature ptc-miR536

Accession MIMAT0025260
Description Populus trichocarpa ptc-miR536 mature miRNA
Sequence 15 - CGCUCGCCAGCGUUGCACCACC - 36
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233