miRBase entry: ptc-MIR6452

Stem-loop ptc-MIR6452


Accession
MI0022034
Description
Populus trichocarpa ptc-MIR6452 precursor miRNA


Sequence

ugauucuucugguauugucucaauugccuuugcaauugaucaacaaucaaauguagauuguuguucuagaucaauUGCAAAGGUAACUGAGACAAUcaaauguagaacuaagggaaca
...(((((.(((((((((((((.(((((((((((((((((((((((((.......)))))))......)))))))))))))))))).)))))))))..........)))).)))))..

Structure
uga     c    ----------         a                  ------       aa 
   uucuu uggu          auugucuca uugccuuugcaauugauc      aacaauc  a
   ||||| ||||          ||||||||| ||||||||||||||||||      |||||||  u
   aaggg auca          UAACAGAGU AAUGGAAACGUuaacuag      uuguuag  g
-ac     a    agauguaaac         C                  aucuug       au 


Annotation confidence Not enough data
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Genome context
CM000353.2: 7053544-7053661 [-]

Database links

Mature ptc-miR6452

Accession MIMAT0025262
Description Populus trichocarpa ptc-miR6452 mature miRNA
Sequence 76 - UGCAAAGGUAACUGAGACAAU - 96
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034