miRBase entry: ptc-MIR6457a

Stem-loop ptc-MIR6457a


Accession
MI0022039
Description
Populus trichocarpa ptc-MIR6457a precursor miRNA
Gene family
MIPF0001534; MIR6457


Sequence

aggaaguaagaguagaguuggaagaaauaagagaagagucgagccaaacuaaaagaggaaacuaauaUAAUCUCUCUGCAGAAUGCUGcaaagcaacaucgucuagaucugaaacauaagaucaagcagaaguugguuugcugcacucugcugggagauuagauuaguuuccucuucuaguuugacagccucuucucuuauuuccucaaacuucucccugacuuccu
(((((((.((.(..(((((.((.(((((((((((((((.(..(.(((((((.((((((((((((((.(((((((((.(((((.(((.(((((.((((.((..((.(((((........))))).))..)).)))).))))).))).))))).))))))))).)))))))))))))).))))))).).).))))))))))))))).)).)))))..).)).)))))))

Structure
       a  a ua     g  a               u ga c       a              a         U     A   U     g    a  gu  a     gaa 
aggaagu ag g  gaguu ga gaaauaagagaagag c  g caaacua aagaggaaacuaau UAAUCUCUC GCAGA UGC Gcaaa caac uc  cu gaucu   a
||||||| || |  ||||| || ||||||||||||||| |  | ||||||| |||||||||||||| ||||||||| ||||| ||| ||||| |||| ||  || |||||    
uccuuca uc c  uucaa cu cuuuauucucuucuc g  c guuugau uucuccuuugauua auuagaggg cgucu acg cguuu guug ag  ga cuaga   c
       g  c uc     a  c               c -a a       c              g         u     c   u     g    a  ac  a     aua 


Annotation confidence Not enough data
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Genome context
CM000338.2: 1273447-1273673 [-]

Database links

Mature ptc-miR6457a

Accession MIMAT0025267
Description Populus trichocarpa ptc-miR6457a mature miRNA
Sequence 68 - UAAUCUCUCUGCAGAAUGCUG - 88
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034