Stem-loop ptc-MIR169ag

Accession

MI0022041

Description

Populus trichocarpa ptc-MIR169ag precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169ag
(12 sentences)

Sequence

ugagagaagagaggucuaauaugaggaucagagccuuguguggAAGCCAAGGGUGACUUGCCUGAgcauuucaggaagguuucuauaugaaagcuuuuuguuaguuuugcaggaagucaaccucggcuuuccuguagucucuucuuucucaugcuaugccuuucucuucuucca
.(((((.((((((((.((.((((((((..((((.((...(.(((((((.(((.((((((.(((((((.(..(((((((.((((.....)))).)))))))..))))...)))))))))).))).))))))))...)).))))...)))))))).)).)))))))).)))))...

Structure

--u     a        c  a        -uc    c  ugu u       A   G      G    ---   a uu       g    u 
   gagag agagaggu ua uaugagga   agag cu   g ggAAGCC AGG UGACUU CCUG   Agc u  caggaag uuuc a
   ||||| |||||||| || ||||||||   |||| ||   | ||||||| ||| |||||| ||||   ||| |  ||||||| |||| u
   uucuu ucuuuccg au guacucuu   ucuc ga   c cuuucgg ucc acugaa ggac   uug a  guuuuuc aaag a
acc     c        u  c        ucu    u  ugu -       c   a      -    guu   - uu       g    u 

Annotation confidence Not enough data

Genome context

CM000345.2: 12179585-12179758 [+]

Mature ptc-miR169ag

• Accession: MIMAT0025269
• Description: Populus trichocarpa ptc-miR169ag mature miRNA
• Sequence: 44 - AAGCCAAGGGUGACUUGCCUGA - 65
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034