miRBase entry: ptc-MIR2111a

Stem-loop ptc-MIR2111a


Accession
MI0022042
Description
Populus trichocarpa ptc-MIR2111a precursor miRNA
Gene family
MIPF0000754; MIR2111


Sequence

cuugauauugggucaggacuuggUAAUCUGCAUCCUGAGGUUUGgaucaucauguaguuugaucuaguccuuggguugcagauuaccucuuccucacugacaaugcagag
.(((.((((((((.((((...(((((((((((.(((((((.((((((((..........)))))))).))))))).)))))))))))...)))).)))..))))))))..

Structure
-c   a     --   c    cuu           U       U        ucau 
  uug uauug  ggu agga   ggUAAUCUGCA CCUGAGG UUGgauca    g
  ||| |||||  ||| ||||   ||||||||||| ||||||| ||||||||     
  gac guaac  uca uccu   ccauuagacgu ggguucc gaucuagu    u
ga   -     ag   c    ucu           u       u        uuga 


Annotation confidence Not enough data
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Genome context
CM000352.2: 8456133-8456242 [+]

Database links

Mature ptc-miR2111a

Accession MIMAT0025270
Description Populus trichocarpa ptc-miR2111a mature miRNA
Sequence 24 - UAAUCUGCAUCCUGAGGUUUG - 44
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034