miRBase entry: ptc-MIR482b

Stem-loop ptc-MIR482b


Accession
MI0022043
Description
Populus trichocarpa ptc-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
7 open access papers mention ptc-MIR482b
(133 sentences)

Sequence

gagaagagccggagggggagacugagaccuacuggaaguugugGGCAUGAGGUGUUUGGCAAGAaaauggaucuuuuccuuaugaugauuucUUACCAAUACCUCUCAUGCCAAugauuuccagcaguuccucccuuucccuucuuucuc
((((((((..((((((((((((((.......(((((((((((.(((((((((.((((((.((((((..(((.....))).........)))))).)))).)).))))))))).)))))))))))))))..)))))))))).))).)))))

Structure
     -   cc          --    agaccua           g         U  -    C      -------au   u 
gagaa gag  ggagggggag  acug       cuggaaguugu GGCAUGAGG GU UUGG AAGAaa         gga c
||||| |||  ||||||||||  ||||       ||||||||||| ||||||||| || |||| ||||||         ||| u
cucuu cuu  ccuuucccuc  ugac       gaccuuuaguA CCGUACUCU CA AACC UUcuuu         ccu u
     u   -c          cu    -------           A         C  U    A      aguaguauu   u 


Annotation confidence Not enough data
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Genome context
CM000341.2: 11901546-11901695 [-]

Database links

Mature ptc-miR482b-3p

Accession MIMAT0025271
Description Populus trichocarpa ptc-miR482b-3p mature miRNA
Sequence 93 - UUACCAAUACCUCUCAUGCCAA - 114
Evidence experimental
miRNAseq [1], Illumina [2]

Mature ptc-miR482b-5p

Accession MIMAT0027338
Description Populus trichocarpa ptc-miR482b-5p mature miRNA
Sequence 44 - GGCAUGAGGUGUUUGGCAAGA - 64
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233