Stem-loop ptc-MIR477d

Accession

MI0022047

Description

Populus trichocarpa ptc-MIR477d precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ptc-MIR477d
(1 sentences)

Sequence

augcuacuacauggauggagaagcuuccgAUCUCCCUCAAAGGCUUCCUCUauaauugccuuacaugauggcauuagUGGACUCCUUUGGGGAGAUGGagagcuuacuccccauaacucaauggcau
((((((....((((..((((((((((.(.(((((((.((((((..(((.(((....((((.........)))).))).)))..))))))))))))).).)))))).)))))))).......))))))

Structure

      ---cuac    au    -      c g       U      CU   U   uaau    uua 
augcua       augg  ggag aagcuu c AUCUCCC CAAAGG  UCC CUa    ugcc   c
||||||       ||||  |||| |||||| | ||||||| ||||||  ||| |||    ||||   a
uacggu       uacc  ccuc uucgag G UAGAGGG GUUUCC  AGG gau    acgg   u
      aacucaa    --    a      a G       -      UC   U   ---u    uag 

Annotation confidence Not enough data

Genome context

CM000351.2: 12480540-12480666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR477d

Mature ptc-miR477d-5p

• Accession: MIMAT0025275
• Description: Populus trichocarpa ptc-miR477d-5p mature miRNA
• Sequence: 30 - AUCUCCCUCAAAGGCUUCCUCU - 51
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR477d-3p

• Accession: MIMAT0025276
• Description: Populus trichocarpa ptc-miR477d-3p mature miRNA
• Sequence: 78 - UGGACUCCUUUGGGGAGAUGG - 98
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233