miRBase entry: ptc-MIR828a

Stem-loop ptc-MIR828a


Accession
MI0022049
Description
Populus trichocarpa ptc-MIR828a precursor miRNA
Gene family
MIPF0000544; MIR828

Literature search
3 open access papers mention ptc-MIR828a
(9 sentences)

Sequence

ucucuuuuuaauguuUCUUGCUCAAAUGAGUAUUCCAacagcaguagccuuaugcaacaagagcauauauuuuuuacuuguaucacuguaauaugauguugcuggaaugcuacuguuucugagaugcucauuugagcaaguaauauuagaagauga
....(((((((((((.((((((((((((((((((.((..(((((((((.....((((((....(((((......(((..........)))))))).))))))......)))))))))..)).)))))))))))))))))).)))))))))))....

Structure
ucuc           U                  C  ac         -cuuau      agag     auuuuu   uugu 
    uuuuuaauguu CUUGCUCAAAUGAGUAUU CA  agcaguagc      gcaaca    cauau      uac    a
    ||||||||||| |||||||||||||||||| ||  |||||||||      ||||||    |||||      |||     
    gaagauuauaa gaacgaguuuacucguag gu  uugucaucg      cguugu    guaua      aug    u
agua           u                  a  cu         uaaggu      ---a     ------   ucac 


Annotation confidence Not enough data
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Genome context
CM000348.2: 2050399-2050554 [-]

Database links

Mature ptc-miR828a

Accession MIMAT0025279
Description Populus trichocarpa ptc-miR828a mature miRNA
Sequence 16 - UCUUGCUCAAAUGAGUAUUCCA - 37
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034