miRBase entry: hbr-MIR396b

Stem-loop hbr-MIR396b


Accession
MI0022057
Description
Hevea brasiliensis hbr-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention hbr-MIR396b
(13 sentences)

Sequence

augacccucuucguauucUUCCACAGCUUUCUUGAACUGcaucucuacuacgaacuggugguuguugcaugccacggcuggccaauuaagcggcuucuugcuucuuguuuuguugcgguucaauaaagcugugggaagauacuaacagggucaa
.(((((((.((.(((((.((((((((((((.((((((((((.(...((...((((.((.(((((((....((((....))))......))))))).)).).)))..))...).)))))))))).)))))))))))).))))).)).))))))).

Structure
a       c  c     c            C          u ucu  uac   - u  u       --gcau    c 
 ugacccu uu guauu UUCCACAGCUUU UUGAACUGca c   ac   gaa c gg gguuguu      gcca g
 ||||||| || ||||| |||||||||||| |||||||||| |   ||   ||| | || |||||||      ||||  
 acuggga aa cauag agggugucgaaa aacuuggcgu g   ug   cuu g uc ucggcga      cggu g
a       c  u     a            u          u uuu  -uu   c u  u       auuaac    c 


Annotation confidence Not enough data
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Genome context
KB622489.1: 62864-63017 [+]

Database links

Mature hbr-miR396b

Accession MIMAT0025287
Description Hevea brasiliensis hbr-miR396b mature miRNA
Sequence 19 - UUCCACAGCUUUCUUGAACUG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22330773
    Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
    Gébelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J
    BMC Plant Biol (2012) 12:18