Stem-loop mja-mir-6489

Accession

MI0022066

Description

Marsupenaeus japonicus mja-mir-6489 precursor miRNA

Sequence

gauugaauggucuagugagGGCACCGGACUGGCGCCCUUggagccgcuaccgccucggcgggcagcgcccucggguCGACGGAAAGGUGUCCAAGCUGGgucauuua
...(((((((((((((..(((((((...(((.(((((..((.((.(((.((((....))))..)))))))..))).)).)))...)))))))..)))))))))))))

Structure

gau             ga       GGA   G  -   UU  a  c   -a    c 
   ugaauggucuagu  gGGCACC   CUG CG CCC  gg gc gcu  ccgc u
   |||||||||||||  |||||||   ||| || |||  || || |||  ||||  
   auuuacugGGUCG  CCUGUGG   GGC GC ggg  cc cg cga  ggcg c
---             AA       AAA   A  u   cu  -  -   cg    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature mja-miR-6489-5p

• Accession: MIMAT0025296
• Description: Marsupenaeus japonicus mja-miR-6489-5p mature miRNA
• Sequence: 20 - GGCACCGGACUGGCGCCCUU - 39
• Evidence: experimental ; Illumina [1]

Mature mja-miR-6489-3p

• Accession: MIMAT0025297
• Description: Marsupenaeus japonicus mja-miR-6489-3p mature miRNA
• Sequence: 77 - CGACGGAAAGGUGUCCAAGCUGG - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22545795
   Characterization of host microRNAs that respond to DNA virus infection in a crustacean
   Huang T, Xu D, Zhang X
   BMC Genomics (2012) 13:159