miRBase entry: mja-mir-6493

Stem-loop mja-mir-6493


Accession
MI0022070
Description
Marsupenaeus japonicus mja-mir-6493 precursor miRNA


Sequence

agccACGUCCGGCAGGUUUUACCCCUgaaagccunucaAGGGGGAAACCGCGCUGAGCGUUAa
....((((.((((.((((((.(((((((.......)).)))))))))))..)))).))))...

Structure
agcc    C    -A      A     -  aa 
    ACGU CGGC  GGUUUU CCCCU ga  g
    |||| ||||  |||||| ||||| ||  c
    UGCG GUCG  CCAAAG GGGGA cu  c
-aAU    A    CG      -     a  nu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mja-miR-6493-5p

Accession MIMAT0025301
Description Marsupenaeus japonicus mja-miR-6493-5p mature miRNA
Sequence 5 - ACGUCCGGCAGGUUUUACCCCU - 26
Evidence experimental
Illumina [1]

Mature mja-miR-6493-3p

Accession MIMAT0025302
Description Marsupenaeus japonicus mja-miR-6493-3p mature miRNA
Sequence 39 - AGGGGGAAACCGCGCUGAGCGUUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22545795
    Characterization of host microRNAs that respond to DNA virus infection in a crustacean
    Huang T, Xu D, Zhang X
    BMC Genomics (2012) 13:159