miRBase entry: prv-mir-LLT7

Stem-loop prv-mir-LLT7


Accession
MI0022078
Description
Pseudorabies virus prv-mir-LLT7 precursor miRNA


Sequence

uggccgcccccgggggguugaugGGGAUGGGCGCUCGGGGGUGAucgucugcuaccaaaccgcACCACCGUCCCCCUGUCCCUcauccacuucucgacggccggcuc
.(((((((..((((((((.((((((((((((.(..(((.((((...((.((....)).))..)))).)))..).)))))))).)))).))))))))..)).))))).

Structure
u     -  cc        u    -        C CU   G    Auc  c  c 
 ggccg cc  cggggggu gaug GGGAUGGG G  CGG GGUG   gu ug u
 ||||| ||  |||||||| |||| |||||||| |  ||| ||||   || ||  
 ucggc gg  gcucuuca cuac CCCUGUCC C  GCC CCAc   ca ac a
c     c  ca        c    U        C CU   A    -gc  a  c 


Annotation confidence Not enough data
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Genome context
NC_006151.1: 99279-99385 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from prv-mir-LLT7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prv-miR-LLT7-5p

Accession MIMAT0025310
Description Pseudorabies virus prv-miR-LLT7-5p mature miRNA
Sequence 24 - GGGAUGGGCGCUCGGGGGUGA - 44
Evidence experimental
Ion-Torrent [2]

Mature prv-miR-LLT7-3p

Accession MIMAT0037460
Description Pseudorabies virus prv-miR-LLT7-3p mature miRNA
Sequence 64 - ACCACCGUCCCCCUGUCCCU - 83
Evidence experimental
Illumina [1], Ion-Torrent [2]

References

  1. PubMed ID: 22292087
    Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
    Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
    PLoS One (2012) 7:e30988

  2. PubMed ID: 24475202
    The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
    Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
    PLoS One (2014) 9:e86965