miRBase entry: prv-mir-LLT11a

Stem-loop prv-mir-LLT11a


Accession
MI0022083
Description
Pseudorabies virus prv-mir-LLT11a precursor miRNA
Gene family
MIPF0001541; mir-LLT11


Sequence

gguggcagcgggggAGGCUGGGAGUGGGGACGGAAGAcggaagccagaugaaccugUUCCGCCCGCUCUCCCACCGCCUUUcccucccc
((.((....(((((((((((((((.((((.(((((.(.((............))).)))))))).).))))))..))))))))).))))

Structure
  u  cagc         --      U -   A     G c  aagcc 
gg gg    gggggAGGC  UGGGAG G GGG CGGAA A gg     a
|| ||    |||||||||  |||||| | ||| ||||| | ||      
cc cc    cccUUUCCG  ACCCUC C CCC GCCUU u cc     g
  -  ---u         CC      U G   -     g -  aagua 


Annotation confidence Not enough data
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Genome context
NC_006151.1: 101960-102048 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from prv-mir-LLT11a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prv-miR-LLT11a-5p

Accession MIMAT0025315
Description Pseudorabies virus prv-miR-LLT11a-5p mature miRNA
Sequence 15 - AGGCUGGGAGUGGGGACGGAAGA - 37
Evidence experimental
Illumina [1], Ion-Torrent [2]

Mature prv-miR-LLT11a-3p

Accession MIMAT0037462
Description Pseudorabies virus prv-miR-LLT11a-3p mature miRNA
Sequence 57 - UUCCGCCCGCUCUCCCACCGCCUUU - 81
Evidence experimental
Ion-Torrent [2]

References

  1. PubMed ID: 22292087
    Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
    Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
    PLoS One (2012) 7:e30988

  2. PubMed ID: 24475202
    The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
    Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
    PLoS One (2014) 9:e86965