miRBase entry: pde-MIR166a

Stem-loop pde-MIR166a


Accession
MI0022091
Description
Pinus densata pde-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention pde-MIR166a
(10 sentences)

Sequence

ggggaauguugucuggcucgaggccauccugaaaauaguccacccccgguucuuuugggguuuuuuuggaugccgUCGGACCAGGCUUCAUUCC
..((((((..((((((.(((((((.((((.(((((......(((((.((....)).)))))))))).))))))).)))).))))))..))))))

Structure
gg      uu      c    -   c    u     uagucc     c  u 
  ggaaug  gucugg ucga ggc aucc gaaaa      acccc gg u
  ||||||  |||||| |||| ||| |||| |||||      ||||| ||  
  CCUUAC  CGGACC GGCU ccg uagg uuuuu      ugggg uu c
--      UU      A    g   -    u     ------     u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pde-miR166a

Accession MIMAT0025327
Description Pinus densata pde-miR166a mature miRNA
Sequence 76 - UCGGACCAGGCUUCAUUCC - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132