miRBase entry: pde-MIR166b

Stem-loop pde-MIR166b


Accession
MI0022092
Description
Pinus densata pde-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention pde-MIR166b
(5 sentences)

Sequence

ggggaauguugucuggcucgaggucacucagauuugaugacgaugauucuuugagcugagugacgUCGGACCAGGCUUCAUUCC
..((((((..((((((.((((.(((((((((.(((((.((.......)).)))))))))))))).)))).))))))..))))))

Structure
gg      uu      c    g         a     u  cg 
  ggaaug  gucugg ucga gucacucag uuuga ga  a
  ||||||  |||||| |||| ||||||||| ||||| ||  u
  CCUUAC  CGGACC GGCU cagugaguc gaguu cu  g
--      UU      A    g         -     u  ua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature pde-miR166b

Accession MIMAT0025328
Description Pinus densata pde-miR166b mature miRNA
Sequence 66 - UCGGACCAGGCUUCAUUCC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132