miRBase entry: pde-MIR169

Stem-loop pde-MIR169


Accession
MI0022093
Description
Pinus densata pde-MIR169 precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention pde-MIR169
(2 sentences)

Sequence

acuauuuauuCAGCCAAGGAUGACUUGCCUAgaucuuguuaccaguaucggcuaguuaugcugauaucgauuucagucacuaggugagucguccuuggcuaaa
...........(((((((((((((((((((((...(((..(.(.((((((((.......)))))))).).)..)))...)))))))))))))))))))))...

Structure
acuauuuauuC                     auc   uu c a        ua 
           AGCCAAGGAUGACUUGCCUAg   uug  a c guaucggc  g
           |||||||||||||||||||||   |||  | | ||||||||  u
           ucgguuccugcugaguggauc   gac  u g uauagucg  u
--------aaa                     acu   uu a c        ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pde-miR169

Accession MIMAT0025329
Description Pinus densata pde-miR169 mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCUA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132