miRBase entry: pde-MIR171

Stem-loop pde-MIR171


Accession
MI0022094
Description
Pinus densata pde-MIR171 precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
1 open access papers mention pde-MIR171
(6 sentences)

Sequence

gaaagaaugugauguuggcuaggcucaaucggauuguaacgcccacggaauuuggucuugugaucUGAUUGAGCCGUGCCAAUAUCacauucuaac
...((((((((((((((((..((((((((((((((((((.(((..........))).))))))))))))))))))..))))))))))))))))...

Structure
gaa                ua                  c   cacg 
   agaaugugauguuggc  ggcucaaucggauuguaa gcc    g
   ||||||||||||||||  |||||||||||||||||| |||     
   ucuuacaCUAUAACCG  CCGAGUUAGUcuaguguu ugg    a
caa                UG                  c   uuua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature pde-miR171

Accession MIMAT0025330
Description Pinus densata pde-miR171 mature miRNA
Sequence 66 - UGAUUGAGCCGUGCCAAUAUC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132