Stem-loop pde-MIR171

Accession

MI0022094

Description

Pinus densata pde-MIR171 precursor miRNA

Literature search

1 open access papers mention pde-MIR171
(6 sentences)

Sequence

gaaagaaugugauguuggcuaggcucaaucggauuguaacgcccacggaauuuggucuugugaucUGAUUGAGCCGUGCCAAUAUCacauucuaac
...((((((((((((((((..((((((((((((((((((.(((..........))).))))))))))))))))))..))))))))))))))))...

Structure

gaa                ua                  c   cacg 
   agaaugugauguuggc  ggcucaaucggauuguaa gcc    g
   ||||||||||||||||  |||||||||||||||||| |||     
   ucuuacaCUAUAACCG  CCGAGUUAGUcuaguguu ugg    a
caa                UG                  c   uuua 

Annotation confidence Low

Genome context

Unknown

Mature pde-miR171

• Accession: MIMAT0025330
• Description: Pinus densata pde-miR171 mature miRNA
• Sequence: 66 - UGAUUGAGCCGUGCCAAUAUC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132