Stem-loop pde-MIR390

Accession

MI0022095

Description

Pinus densata pde-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

1 open access papers mention pde-MIR390
(3 sentences)

Sequence

uaaugguauaaagaaauuaugAAGCCCAGGAUGGAUAGCGCCagccccacuugaaauuugcagugggcgcuaucccuccugagcuuuguaauucc
..............(((((((((((.(((((.((((((((((.((..((.........))..)).)))))))))).))))).)))))))))))..

Structure

uaaugguauaaaga           C     U          a  cc  cuu 
              aauuaugAAGC CAGGA GGAUAGCGCC gc  ca   g
              ||||||||||| ||||| |||||||||| ||  ||   a
              uuaauguuucg guccu ccuaucgcgg ug  gu   a
------------cc           a     c          g  ac  uua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR390

• Accession: MIMAT0025331
• Description: Pinus densata pde-miR390 mature miRNA
• Sequence: 22 - AAGCCCAGGAUGGAUAGCGCC - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132