Stem-loop pde-MIR396

Accession

MI0022096

Description

Pinus densata pde-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention pde-MIR396
(2 sentences)

Sequence

uuuUCCCACGGCUUUCUUGAACUUcucauucggaacuguuaucagugcguccggccgaugcccacagaacucaucaugaaguucaagaaagccguggaaaaauauaa
((((((.((((((((((((((((((....(((((((((....))))...)))))..((((...........))))..))))))))))))))))))))))))......

Structure

------      C                  -------------------ucau     ---    u 
      uuuUCC ACGGCUUUCUUGAACUUc                       ucgga   acug u
      |||||| ||||||||||||||||||                       |||||   ||||  
      aaaagg ugccgaaagaacuugaag                       ggccu   ugac a
aauaua      -                  uacuacucaagacacccguagcc     gcg    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR396

• Accession: MIMAT0025332
• Description: Pinus densata pde-miR396 mature miRNA
• Sequence: 4 - UCCCACGGCUUUCUUGAACUU - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132