Stem-loop pde-MIR1313

Accession

MI0022114

Description

Pinus densata pde-MIR1313 precursor miRNA

Gene family

MIPF0001611; MIR1313

Literature search

1 open access papers mention pde-MIR1313
(4 sentences)

Sequence

ucgugaugguauucUACCACUGAAAUUGUUGUUCGaaauaacaccugcaauucauugauguauaccaccgugguauggcauccuucagcguuucgccaaacuaaccuaguuccaggguugcaacacauggcaugguggaggaucuauugggaaauaaccaaguugcaugaguguauuuauccaacaauaauuucaguggaagacuuccaucgaucuggaagacucau
...((((((...(((.(((((((((((((((((.((((..(((((((((((.........(((((((...)))))))..((((((((.(((...((((...((((((.......)))))).......))))))).))))))))...((((.......)))))))))).).))))..)).)).))))))))))))))))).)))...))))))...............

Structure

------------ucg      uau   A                 C  -  ua    - -      ucauugauguauaccaccgugguauggc        g   uuc    ----aac      ag 
               ugaugg   ucU CCACUGAAAUUGUUGUU Ga aa  acac c ugcaau                            auccuuca cgu   gcca       uaaccu  u
               ||||||   ||| ||||||||||||||||| || ||  |||| | ||||||                            |||||||| |||   ||||       ||||||  u
               gcuacc   aga ggugacuuuaauaacaa cu uu  ugug g acguug                            uaggaggu gua   cggu       guuggg  c
uacucagaaggucua      uuc   a                 c  a  ua    a u      ----------aaccaauaaaggguuauc        g   ---    acacaac      ac 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR1313

• Accession: MIMAT0025350
• Description: Pinus densata pde-miR1313 mature miRNA
• Sequence: 15 - UACCACUGAAAUUGUUGUUCG - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132