miRBase entry: pde-MIR1314

Stem-loop pde-MIR1314


Accession
MI0022115
Description
Pinus densata pde-MIR1314 precursor miRNA
Gene family
MIPF0001609; MIR1314

Literature search
1 open access papers mention pde-MIR1314
(1 sentences)

Sequence

gucauguugguuagaugaaggaauucuucaacauuagaggccgauguggaguuaugcucuugaCCGGCCUCGAAUGUUAGGAGAAuguuuuccucuaccuaagca
....(((((((.(((.(((((.(((((((((((((.(((((((....(((((...)))))....))))))).)))))).))))))).))))).))))))..))))

Structure
guca    --   u   u     a       -      a       augu     u 
    uguu  ggu aga gaagg auucuuc aacauu gaggccg    ggagu  
    ||||  ||| ||| ||||| ||||||| |||||| |||||||    ||||| a
    acga  cca ucu cuuuu uAAGAGG UUGUAA CUCCGGC    ucucg  
----    au   -   c     g       A      G       Cagu     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pde-miR1314

Accession MIMAT0025351
Description Pinus densata pde-miR1314 mature miRNA
Sequence 64 - CCGGCCUCGAAUGUUAGGAGAA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132