Stem-loop sequence ssc-mir-29b-2

Accession

MI0022126 (change log)

Description

Sus scrofa miR-29b-2 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

28 open access papers mention ssc-mir-29b-2
(65 sentences)

Stem-loop

   ---         -          c      g  u    uuuucc 
5'    cuucuggaa gcugguuuca auggug cu agau      a
      ||||||||| |||||||||| |||||| || ||||       
3'    gaggauuuu ugacuaaagu uaccac ga ucua      u
   aau         g          u      -  -    uguuuc 

Deep sequencing

517 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr9: 148552438-148552521 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-29b-2

• ssc-mir-29b-2: chr9: 148552438-148552521 [+]
• ssc-mir-29c: chr9: 148552997-148553084 [+]

Database links

• miRBase Tracker:MI0022126

Mature sequence ssc-miR-29b

• Accession: MIMAT0002137
• Sequence: 52 - uagcaccauuugaaaucaguguu - 74
• Deep sequencing: 1057 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).