Stem-loop sequence ssc-mir-212

Accession

MI0022140 (change log)

Description

Sus scrofa miR-212 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

3 open access papers mention ssc-mir-212
(8 sentences)

Stem-loop

   -gc   c   -ca  u     cu      c      ccc     
5'    gcg cgg   cc uggcu  agacug uuacug   gggc 
      ||| |||   || |||||  |||||| ||||||   ||| c
3'    cgc gcc   gg acuga  ucugac aaugac   cccg 
   guc   a   acc  c     cc      -      --u     

Deep sequencing

35 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr12: 50016151-50016232 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-212

• ssc-mir-212: chr12: 50016151-50016232 [-]
• ssc-mir-132: chr12: 50015722-50015799 [-]

Database links

• miRBase Tracker:MI0022140

Mature sequence ssc-miR-212

• Accession: MIMAT0025370
• Sequence: 11 - accuuggcucuagacugcuuacu - 33
• Deep sequencing: 22 reads, 9 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).