Stem-loop tgu-mir-1397

Accession

MI0022174

Description

Taeniopygia guttata tgu-mir-1397 precursor miRNA

Gene family

MIPF0000642; mir-1397

Sequence

ugcgaugugugcauUGCAUUGCGACGGGUUACAUCAcuaguccuaacaugAUGUAACCCAACGCAGCAUGAuguaagcgucgug
.(((((((.((((((...(((((..(((((((((((...((....)).)))))))))))..)))))...)))))).))))))).

Structure

u       g      GCA     AC           cua  c 
 gcgaugu ugcauU   UUGCG  GGGUUACAUCA   gu c
 ||||||| ||||||   |||||  |||||||||||   ||  
 ugcugcg auguAG   GACGC  CCCAAUGUAgu   ca u
g       a      UAC     AA           --a  a 

Annotation confidence Not enough data

Genome context

chr1: 21937138-21937221 [+]

Mature tgu-miR-1397-5p

• Accession: MIMAT0025397
• Description: Taeniopygia guttata tgu-miR-1397-5p mature miRNA
• Sequence: 15 - UGCAUUGCGACGGGUUACAUCA - 36
• Evidence: experimental ; Illumina [2]

Mature tgu-miR-1397-3p

• Accession: MIMAT0027341
• Description: Taeniopygia guttata tgu-miR-1397-3p mature miRNA
• Sequence: 51 - AUGUAACCCAACGCAGCAUGA - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727