Stem-loop hpa-MIR156a

Accession

MI0022234

Description

Helianthus paradoxus hpa-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

augauguuugcgacggugaugaUGACAGAAGAGAGAGAGCACagucagauggcaccaccggcugcaccacccgagccgguggcggauacccgucacagaacagcuugucauaauugcugcuauuauuauuauuagccucaaaacuaagaaguugcugaugacagacuuuugguggugauguuucgugguugaguuuaaggugugaacccgaacaguuguuaugaaacaggcugaauugcugcuuuccguguacuuuuuuggugcccgaagaugauucuggauauggguucuguuuuagggcccgggucgaguauguggguucuucuucacacuugaccauucccguccauaguggguucgugagaguugguguuugguacacguguggacuugcgaauuguaacaucgugguaccuuggugaguggagaaaagcccugcagcacgugagguaucggguugaggcuuucuucuccuacgguuauguccaucaagacguuucgcagcuucguucccccggcg
((((((.......(((((((.((((((..........(((....((.((((((.(((((((((..........))))))))).).....)))))...))...))))))))).))))))).......))))))..(((..........((((((((.((.....((((((((((((..(((..((((((..(((...(((((.(.(((((((.((((((((....)))).))))......((((((.(((((...(((((((...))))))).....((.(((.(((((((((...))))))))).))).))..((((((((.((((((((...(.((((.....((((((.(((((((((((((.....((((.....)))).......))))))))))....))).)))).))..)))).))))))))).))))).)))))))).))))))))))))).).)))))...))))))))).)))..))))))))).)))))))))))))........))).

Structure

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------      uuugcga       g      GAAGAGAGAG   ACag  --a     ----- a         gcac 
                                                                                                                                                                                                                                                                                                                                                                                                    augaug       cggugau aUGACA          AGC    uc   gaugg     c ccaccggcu    c
                                                                                                                                                                                                                                                                                                                                                                                                    ||||||       ||||||| ||||||          |||    ||   |||||     | |||||||||     
                                                                                                                                                                                                                                                                                                                                                                                                    uauuau       gucguua uacugu          ucg    ag   cugcc     g gguggccga    a
gcggcccccuugcuucgacgcuuugcagaacuaccuguauuggcauccucuucuuucggaguugggcuauggagugcacgacgucccgaaaagaggugagugguuccauggugcuacaauguuaagcguucaggugugcacaugguuugugguugagagugcuugggugauaccugcccuuaccaguucacacuucuucuuggguguaugagcugggcccgggauuuugucuuggguauaggucuuaguagaagcccgugguuuuuucaugugccuuucgucguuaagucggacaaaguauuguugacaagcccaaguguggaauuugaguuggugcuuuguaguggugguuuucagacaguagucguugaagaaucaaaacuccgau      uauuauc       a      ----------   -aca  aca     cauag c         gccc 

Annotation confidence Not enough data

Genome context

Unknown

Mature hpa-miR156a

• Accession: MIMAT0025494
• Description: Helianthus paradoxus hpa-miR156a mature miRNA
• Sequence: 23 - UGACAGAAGAGAGAGAGCAC - 42
• Evidence: not_experimental

References

1. PubMed ID: 21670966
   Identification of MicroRNAs and their targets in Helianthus
   "Barozai MY, Baloch IA, Din M"
   "Mol Biol Rep (2012) 39:2523-2532