Stem-loop htu-MIR162a

Accession

MI0022240

Description

Helianthus tuberosus htu-MIR162a precursor miRNA

Gene family

MIPF0000127; MIR162_1

Sequence

ucauuuguguucgguagaggaucacuggauucagcgguucaucgaucuguuccauaauccuaaugauugaauuucauacgacgauugagagagagauacgggaaaaggaaucgaUCGAUAAACCUCUGCAUCCAGuguucuuccugcucagcacgaucuuguuugugauuc
....(((((((.(((((((((.((((((((.(((.((((.(((((((.(((((....((((.....((...(((((.........)))))..)).....))))...))))).))))))).)))).))).)))))))).)))).))))).)))))))...............

Structure

-----------ucau       c     -    u        u   c    c       u     auaa    aauga  gaa     uac 
               uuguguu gguag agga cacuggau cag gguu aucgauc guucc    uccu     uu   uuuca   g
               ||||||| ||||| |||| |||||||| ||| |||| ||||||| |||||    ||||     ||   |||||   a
               agcacga ucguc uucu guGACCUA GUC CCAA UAGCUag uaagg    aggg     ag   agagu   c
cuuaguguuuguucu       c     c    u        C   U    A       c     -aaa    cauag  -ag     uag 

Annotation confidence Not enough data

Genome context

Unknown

Mature htu-miR162a

• Accession: MIMAT0025500
• Description: Helianthus tuberosus htu-miR162a mature miRNA
• Sequence: 115 - UCGAUAAACCUCUGCAUCCAG - 135
• Evidence: not_experimental

References

1. PubMed ID: 21670966
   Identification of MicroRNAs and their targets in Helianthus
   "Barozai MY, Baloch IA, Din M"
   "Mol Biol Rep (2012) 39:2523-2532