miRBase entry: bta-mir-3154

Stem-loop bta-mir-3154


Accession
MI0022269
Description
Bos taurus bta-mir-3154 precursor miRNA
Gene family
MIPF0001387; mir-3154


Sequence

8 reads, 2 reads per million, 7 experiments
aggccccuccuucccagccacagcuccugcucgccccugccacgucaaaagaggCAGAAGGGGAGUCGGAGCAGAaaggggaccc
.(((((((..(((.........(((((.((((.((((((((.(.......).)))))..))))))).))))).)))))))).)).

Structure
a  -     cc   ccagccaca     u    g   --     a gu 
 gg ccccu  uuc         gcucc gcuc ccc  cugcc c  c
 || |||||  |||         ||||| |||| |||  ||||| |  a
 cc gggga  aAG         CGAGG UGAG GGG  GACgg g  a
c  a     --   --------A     C    -   AA     a aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr11: 99127964-99128048 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-3154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3154

Accession MIMAT0025529
Description Bos taurus bta-miR-3154 mature miRNA
Sequence 55 - CAGAAGGGGAGUCGGAGCAGA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026