Stem-loop sequence bta-mir-2285n-3

Accession

MI0022284 (change log)

Description

Bos taurus miR-2285n-3 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285n-3
(15 sentences)

Stem-loop

   a ug     g             gcau        au 
5'  u  gguug cccaaaaguucau    guuuuucc  u
    |  ||||| |||||||||||||    ||||||||  a
3'  g  ccaac ggguuuucaagua    caaaaagg  c
   - gu     a             agcc        ca 

Deep sequencing

6900 reads, 152 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr18: 25205165-25205240 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000007129 ; NLRC5-201; intron 13

Database links

• miRBase Tracker:MI0022284

Mature sequence bta-miR-2285n

• Accession: MIMAT0025531
• Sequence: 45 - aaaaacccgaaugaacuuuugg - 66
• Deep sequencing: 24101 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285n

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).