miRBase entry: bta-mir-6536-1

Stem-loop bta-mir-6536-1


Accession
MI0022342
Description
Bos taurus bta-mir-6536-1 precursor miRNA
Gene family
MIPF0001479; mir-6536

Literature search
2 open access papers mention bta-mir-6536-1
(2 sentences)

Sequence

83 reads, 13 reads per million, 17 experiments
auugaccaacUUUAAGUAUACGAUGAACUGCagcaugccaggcuucccugcaguucaucguauacuuaaaguuggucaguu
(((((((((((((((((((((((((((((((((...((...))....))))))))))))))))))))))))))))))))).

Structure
-                                 -cau  c 
 auugaccaacUUUAAGUAUACGAUGAACUGCag    gc  
 |||||||||||||||||||||||||||||||||    || a
 ugacugguugaaauucauaugcuacuugacguc    cg  
u                                 ccuu  g 


Annotation confidence Not enough data
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Genome context
chr9: 39576511-39576591 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-6536-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-6536

Accession MIMAT0025572
Description Bos taurus bta-miR-6536 mature miRNA
Sequence 11 - UUUAAGUAUACGAUGAACUGC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026