miRBase entry: gga-mir-6542

Stem-loop gga-mir-6542


Accession
MI0022359
Description
Gallus gallus gga-mir-6542 precursor miRNA


Sequence

60 reads, 2 reads per million, 5 experiments
agcggccccucguuccccaucacgaauuaccuggcgccaguGUCUGCCAGCAUCAGCCCCAGUgccgucaccagugccaACGGGACAGUGCUGAAGACUAcuggagccagugcagugacauccgggg
.(((......))).((((.((((.......(((((.(((((((((..((((((...(((..((((........))))....)))...)))))).)))).))))).)))))....)))).....))))

Structure
agcggccccucguu    ----a    gaauuac     g     -    GC      CAG   --CA    cgu 
              cccc     ucac       cuggc ccagu GUCU  CAGCAU   CCC    GUgc   c
              ||||     ||||       ||||| ||||| ||||  ||||||   |||    ||||    
              gggg     agug       gaccg ggucA CAGA  GUCGUG   GGG    cgug   a
--------------    ccuac    ---acgu     a     U    -A      ACA   CAac    acc 


Annotation confidence Not enough data
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Genome context
chr3: 4430921-4431047 [+]

Database links

Mature gga-miR-6542-5p

Accession MIMAT0025589
Description Gallus gallus gga-miR-6542-5p mature miRNA
Sequence 42 - GUCUGCCAGCAUCAGCCCCAGU - 63
Evidence experimental
Illumina [1]

Mature gga-miR-6542-3p

Accession MIMAT0025590
Description Gallus gallus gga-miR-6542-3p mature miRNA
Sequence 80 - ACGGGACAGUGCUGAAGACUA - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227