miRBase entry: gga-mir-6544

Stem-loop gga-mir-6544


Accession
MI0022360
Description
Gallus gallus gga-mir-6544 precursor miRNA


Sequence

228 reads, 5 reads per million, 5 experiments
uuccguaagaacuagggcuuguaagaUUCAGAAAAGGAUAUGAAUUGUccuuucaguggugacAAGUUGUAUUUCUUUUCUGACAGUgcgucagcgucaagaagag
..((..........))(((((((....((((((((((((((((.(((((((......)).))))).))))).)))))))))))...))))..)))...........

Structure
uuccguaagaacuagg   --    agaU           -     A     -  uu 
                gcu  ugua    UCAGAAAAGGA UAUGA UUGUc cu  c
                |||  ||||    ||||||||||| ||||| ||||| ||   
                cga  gcgU    AGUCUUUUCUU AUGUU AAcag gg  a
-----gagaagaacug   cu    -GAC           U     G     u  ug 


Annotation confidence Not enough data
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Genome context
chr5: 24455285-24455390 [-]

Database links

Mature gga-miR-6544-5p

Accession MIMAT0025591
Description Gallus gallus gga-miR-6544-5p mature miRNA
Sequence 27 - UUCAGAAAAGGAUAUGAAUUGU - 48
Evidence experimental
Illumina [1]

Mature gga-miR-6544-3p

Accession MIMAT0025592
Description Gallus gallus gga-miR-6544-3p mature miRNA
Sequence 64 - AAGUUGUAUUUCUUUUCUGACAGU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227