miRBase entry: gga-mir-6546

Stem-loop gga-mir-6546


Accession
MI0022362
Description
Gallus gallus gga-mir-6546 precursor miRNA


Sequence

14 reads, 1 reads per million, 2 experiments
cagugcuggugcugucugugcagacucacagggcauguccugcAGGAGCGCCUCUGAGCUCCCCUcugcuuccagggGGAGUUCAGCUGUGCUGCUGCagggcucugcccaucugcu
..(((..(((.((((....)))))))))).(((((.(((((((((.(((((..(((((((((((.(((....))))))))))))))..))))).)))))))))..))))).......

Structure
cagugcuggugcugucugugcagacucaca     -u         G     CU           U   c 
                              gggca  guccugcAG AGCGC  CUGAGCUCCCC cug u
                              |||||  ||||||||| |||||  ||||||||||| |||  
                              cccgu  cgggaCGUC UCGUG  GACUUGAGGgg gac u
-----------------------ucgucua     cu         G     UC           -   c 


Annotation confidence Not enough data
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Genome context
chr7: 36448362-36448478 [-]

Database links

Mature gga-miR-6546-5p

Accession MIMAT0025595
Description Gallus gallus gga-miR-6546-5p mature miRNA
Sequence 44 - AGGAGCGCCUCUGAGCUCCCCU - 65
Evidence experimental
Illumina [1]

Mature gga-miR-6546-3p

Accession MIMAT0025596
Description Gallus gallus gga-miR-6546-3p mature miRNA
Sequence 78 - GGAGUUCAGCUGUGCUGCUGC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227